Bioinformatics

type of coefficient

collection of chemicals

aligning and merging fragments of DNA sequences to reconstruct the original sequence

digital nucleic acid sequence database, assembled by scientists as a representative example of a species' set of genes

nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For proteins, a sequence motif is distinguished from a structural motif

file format

term

thumb|400px|Workflow overview of a ChIP-on-chip experiment. ChIP-on-chip (also known as ChIP-chip) is a technology that combines chromatin immunoprecipitation ('ChIP') with DNA microarray ("chip"). Like regular ChIP, ChIP-on-chip is used to investigate interactions between proteins and DNA in vivo. Specifically, it allows the identification of the cistrome, the sum of binding sites, for DNA-binding proteins on a genome-wide basis. Whole-genome analysis can be performed to determine the locations of binding sites for almost any protein of interest. As the name of the technique suggests, such pr

computational modeling of molecular interaction

REDIRECT Phenotype#Definition

technique in computer vision

Bioinformatic graphic

type of similarity matrix in computational biology

data mining technique

list of standard rules to translate DNA encoded information into proteins

regions of biomolecules capable of binding to DNA

branch of bioinformatics

HubMed is an alternative, third-party interface to PubMed, the database of biomedical literature produced by the National Library of Medicine. It transforms data from PubMed and integrates it with data from other sources. Features include relevance-ranked search results, direct citation export, tagging and graphical display of related articles.

plot

Graph measuring gene relationships

thumb|The sequence ATGG has two 3-mers: ATG and TGG. In bioinformatics, '''k-mers' are substrings of length k contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed of nucleotides (i.e. A, T, G, and C), k-mers are capitalized upon to assemble DNA sequences, improve heterologous gene expression, identify species in metagenomic samples, and create attenuated vaccines. Usually, the term k''-mer refers to all of a sequence's subsequences of length k, such that the sequence AGAT would have four monomers

method for sequencing DNA

discrete set of boolean variables

text file format for storing genomic regions as coordinates and associated annotations

in chemical engineering/systems biology

model of changes in a sequence over evolutionary time

Biclustering, block clustering,

used in genome assembly

file format for genomic data

form of biological modelling

process of interrelating information from diverse sources

scientific naming of genes

biological theory

standard for biodiversity information