Category
page 1Microbiology

microbiology
thumb|right|An agar plate streaked with [[microorganisms]]
anaerobic organism
organism living in the absence of oxygen
antimicrobial resistance
resistance of microbes to drugs directed against them
aerobic organism
organism that thrives in an oxygenated environment
decomposer
thumb|Bacteria are also decomposers.
Decomposers are organisms that break down dead organisms and release the nutrients from the dead matter into the environment around them. Decomposition relies on chemical processes similar to digestion in animals; in fact, many sources use the words digestion and decomposition interchangeably. In both processes, complex molecules are chemically broken down by enzymes into simpler, smaller ones. The term "digestion," however, is commonly used to refer to food breakdown that occurs within animal bodies, and results in the absorption of nutrients from the gut

Mastigophora
thumb|"Flagellata" from Ernst Haeckel's Artforms of Nature, 1904 thumb|Parasitic Excavata (Giardia lamblia)
thumb|Green algae ([[Chlamydomonas)]]
Griffith's experiment
experiment that bacteria can transfer genetic information through transformation

amoeba
right|thumb|upright=1.5|Clockwise from top right: Amoeba proteus, Actinophrys sol, [[Acanthamoeba sp., Nuclearia thermophila., Euglypha acanthophora, neutrophil ingesting bacteria.]]

exotoxin
thumb|373x373px|
This figure shows that exotoxins are secreted by bacterial cells, Clostridium botulinum for example, and are toxic to somatic cells. Somatic cells have antibody|antibodies on the cell wall to target exotoxins and bind to them, preventing the invasion of somatic cells. The binding of the exotoxin and antibody forms an antigen-antibody interaction and the exotoxins are targeted for destruction by the immune system. If this interaction does not happen, the exotoxins bind to the [[exotoxin receptors that are on the cell surface and causes death of the host cell by inhibiting prote
human microbiome
microorganisms in or on human tissues and biofluids
microbial cyst
resting or dormant stage of a microorganism
serotype
thumb|right|300px|Two serotypes 1a and 1b with antigens 2a and 2b on surface, which are recognized by two distinct [[antibodies, 3a and 3b, respectively]]
germ theory of disease
prevailing theory about the cause of infectious diseases
symbiogenesis
thumb|upright=2.2|In the theory of symbiogenesis, a merger of an archaean and an aerobic bacterium created the eukaryotes, with aerobic mitochondria; a second merger added [[chloroplasts, creating the green plants. The original theory by Lynn Margulis proposed an additional preliminary merger, but this is poorly supported and not now generally believed.]]
Symbiogenesis (endosymbiotic theory, or serial endosymbiotic theory) is the leading evolutionary theory of the origin of eukaryotic cells from prokaryotic organisms. The theory holds that mitochondria, plastids such as chloroplasts, and possi
mixotroph
A mixotroph is an organism that uses a mix of different sources of energy and carbon, instead of having a single trophic mode. Mixotrophs are situated somewhere on the continuum from complete autotrophy to complete heterotrophy. It is estimated that mixotrophs comprise more than half of all microscopic plankton. There are two types of eukaryotic mixotrophs. There are those with their own chloroplasts – including those with endosymbionts providing the chloroplasts. And there are those that acquire them through kleptoplasty, or through symbiotic associations with prey, or through 'enslavement' o

aerobiology
231x231px|thumb|Some common air-borne spores
xenobot
Xenobots, named after the clawed frog (Xenopus laevis), are synthetic lifeforms that are designed by computers to perform some desired function and built by combining together different biological tissues. There is debate among scientists whether xenobots are robots, organisms, or something else entirely.
carbon fixation
conversion of carbon from CO2 to organic compounds
vaginal flora
community of microorganisms in the vagina
Leeuwenhoek Medal
award

fungiculture
thumb|Variety of mushrooms cultivated for culinary use
Fungiculture is the cultivation of fungi such as mushrooms. Cultivating fungi can yield foods (which include mostly mushrooms), medicine, construction materials and other products. A mushroom farm is involved in the business of growing fungi.
lithotroph
Lithotrophs are a diverse group of organisms using an inorganic substrate (usually of mineral origin) to obtain reducing equivalents for use in biosynthesis (e.g., carbon dioxide fixation) or energy conservation (i.e., ATP production) via aerobic or anaerobic respiration. While lithotrophs in the broader sense include photolithotrophs like plants, chemolithotrophs are exclusively microorganisms; no known macrofauna possesses the ability to use inorganic compounds as electron sources. Macrofauna and lithotrophs can form symbiotic relationships, in which case the lithotrophs are called "prokaryo
microbial mat
multi-layered sheet of microorganisms

microbiota
thumb|upright=2| Diverse microbial communities of characteristic microbiota are part of plant microbiomes, and are found on the outside surfaces and in the internal tissues of the host plant, as well as in the surrounding soil.
contagious disease
subset category of transmissible diseases, which are transmitted to other persons
Shiga toxins
class of bacterial protein complexes
obligate anaerobe
microorganism

microbiologist
A microbiologist (from Greek ) is a scientist who studies microscopic life forms and processes. This includes study of the growth, interactions and characteristics of microscopic organisms such as bacteria, algae, fungi, and some types of parasites and their vectors. Most microbiologists work in offices and/or research facilities, both in private biotechnology companies and in academia. Most microbiologists specialize in a given topic within microbiology such as bacteriology, parasitology, virology, or immunology.
obligate aerobe
organism that requires oxygen to grow
Akşemseddin
Akshamsaddin (Muhammad Shams al-Din bin Hamzah, ) (1389 in Damascus – 16 February 1459 in Göynük, Bolu), was an influential Ottoman Sunni Muslim scholar, poet, and mystic saint.
human milk oligosaccharide
group of compounds

nanobe
thumb|upright=1.5| Structures found in the Allan Hills 84001|ALH84001 meteorite are similar to the structures found in nanobes
nucleomorph
thumb|Diagram of a four membraned plastid containing a nucleomorph
Nucleomorphs are small, vestigial eukaryotic nuclei found between the inner and outer pairs of membranes in certain plastids. They are thought to be vestiges of red and green algal nuclei that were engulfed by a larger eukaryote. Because the nucleomorph lies between two sets of membranes, nucleomorphs support the endosymbiotic theory and are evidence that the plastids containing them are complex plastids. Having two sets of membranes indicate that the plastid, a prokaryote, was engulfed by a eukaryote, an alga, which was then e
phage display
biological technique to evolve proteins using bacteriophages
tyndallization
Tyndallization is a process from the nineteenth century for sterilizing substances, usually food, named after its inventor John Tyndall, that can be used to kill heat-resistant endospores. Although now considered dated, it is still occasionally used.
microbial toxin
toxin produced by microorganisms
soil microbiology
microbiology of soils

hopane triterpenoid
alt=|thumb|377x377px|Some representative hopanoids: A. Diploptene, also called 22(29)-hopene B. Diplopterol, also called hopan-22-ol, the hydrated cyclomer of diploptene C. Bacteriohopanetetrol (BHT), a common extended hopanoid D. Hopane, the diagenetic product of A and B that results from reducing conditions during deposition and persists in the rock record. The diagenetic product of C would be an extended C35 hopane.Hopanoids are a diverse subclass of triterpenoids with the same hydrocarbon skeleton as the compound hopane. This group of pentacyclic molecules therefore refers to simple hopene

coagulase
thumb|right|S. aureus uses coagulase to form a fibrin coat from fibrinogen present in the bloodstream. This helps the bacteria evade detection and phagocytosis by the immune system.
Coagulase is a protein enzyme produced by several microorganisms that enables the conversion of fibrinogen to fibrin. In the laboratory, it is used to distinguish between different types of Staphylococcus isolates. Importantly, S. aureus is generally coagulase-positive, meaning that a positive coagulase test would indicate the presence of S. aureus or any of the other 11 coagulase-positive Staphylococci.
Human Microbiome Project
former research initiative
human skin flora
community of microorganisms of the skin
viral eukaryogenesis
hypothesis that the eukaryotic cell nucleus evolved from a large DNA virus in a form of endosymbiosis within a methanogenic archaeon
oral microbiome
community of microorganisms in the mouth
Pertussis toxin
group of toxins

Pan-genome
thumb|368x368px|Pangenome analysis of Streptococcus agalactiae genomes made with Anvi'o software whose development is led by [[A. Murat Eren. Genomes obtained from Tettelin et al. (2005). Each circle corresponds to one genome and each radius represents a gene family. At the bottom and at right are localized the core genome families. Some families in the core may have more than one homologous gene per genome. In the middle, at the left of the figure the shell genome is observed. At the top left are shown families from the dispensable genome and singletons. ]]
mating type
molecular mechanisms that regulate compatibility in sexually reproducing eukaryotes
germ theory denialism
pseudoscientific belief that germs do not cause infectious disease
extracellular polymeric substance
gluey polymers secreted by microorganisms to form biofilms
microbial genetics
subfield of genetics devoted to the study of microorganisms
bioaugmentation
Bioaugmentation is a type of bioremediation commonly used in municipal wastewater treatment to restart activated sludge bioreactors. Most cultures available contain microbial cultures, already containing all necessary microorganisms (B. licheniformis, B. thuringiensis, P. polymyxa, B. stearothermophilus, Penicillium sp., Aspergillus sp., Flavobacterium, Arthrobacter, Pseudomonas, Streptomyces, Saccharomyces, etc.). Activated sludge systems are generally based on microorganisms like bacteria, protozoa, nematodes, rotifers, and fungi, which are capable of degrading biodegradable organic matter.
IMViC
The IMViC tests are a group of individual tests used in microbiology lab testing to identify an organism in the coliform group. A coliform is a gram negative, aerobic, or facultative anaerobic rod, which produces gas from lactose within 48 hours. The presence of some coliforms indicate fecal contamination.
pathovar
thumb|Bacterial black spot of mango caused by Xanthomonas citri pv. mangiferaeindicae|Xanthomonas citri pv. mangiferaeindicae
A pathovar is a bacterial strain or set of strains with the same or similar characteristics, that is differentiated at infrasubspecific level from other strains of the same species or subspecies on the basis of distinctive pathogenicity to one or more plant hosts.
thumb|Bacterial leaf blight of common panax (Polyscias guilfoylei) caused by Xanthomonas campestris pv. hederae
Pathovars are named as a ternary or quaternary addition to the species binomial name, for example
Bioclogging
Bioclogging or biological clogging refers to the blockage of pore space in soil by microbial biomass, including active cells and their byproducts such as extracellular polymeric substance (EPS). The microbial biomass obstructs pore spaces, creating an impermeable layer in the soil and significantly reducing water infiltration rates.
Microbes in human culture
Overview of human—microbe interactions
aerotolerant anaerobe
microorganisms whose metabolism is not dependent on, and not poisoned by, oxygen.
microbial art
painting using microbe cultures
Dmitri Leonidovich Romanowsky
Russian physician
Hologenome theory of evolution
evolutionary view of an individual multicellular organism as a community of the host plus all of its symbiotic microbes
history of penicillin
aspect of history
cellular microbiology
is a discipline that bridges microbiology and cell biology