BioPerl

The BioPerl project has developed multiple module distributions for different purposes. The one named BioPerl (named after the project) provides the foundation for all others distributions. This is the repository for the BioPerl distribution only. Other distributions have their own repositories. The BioPerl distribution and BioPerl project have the same name. The BioPerl distribution includes only a subset of the project modules. Because of this, the meaning of "installing BioPerl" is rarely clear. Instead of "install BioPerl", the aim must be "install module X". CPAN.org provides an overview on how to install and manage Perl modules but the bottom-line is: 1. figure out the modules you need, for example Bio::DB::EUtilities (this is typically the modules that are use in your code) 2. install them with cpanm , for example cpanm Bio::DB::EUtilities Alternatively, some Linux distributions have packaged BioPerl and have it available through their package manager. Documentation for individual modules is in POD and can also be read online at metacpan. Useful documentation in the form of example code can also be found in the examples/ and bin/ directories. Additional resources and information about the project is available on the project website, with discussion happening on the [email protected] mailing list, and on the bioperl channel of the freenode IRC server. See the HACKING.md file for details on the project structure, such as building from source and running the test suite.