thumb|right|AMBER is used to minimize the bond stretching energy of this ethane molecule.
thumb|right|AMBER is used to minimize the bond stretching energy of this ethane molecule.
Assisted Model Building with Energy Refinement (AMBER) is the name of a widely used molecular dynamics software package originally developed by Peter Kollman's group at the University of California, San Francisco. It has also, subsequently, come to designate a family of force fields for molecular dynamics of biomolecules that can be used both within the AMBER software suite and with many modern computational platforms.
Discovered by embedding cosine similarity (sentence-transformers MiniLM, 384-dim).