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Stereochemistry

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stereochemistry
thumb|right|400px|The different types of isomers. Stereochemistry focuses on [[stereoisomers.]]
orbital hybridization
mixing (superposition) of atomic orbitals in chemistry
cis–trans isomerism
distinct arrangements of substituents around double bonds in chemistry
chirality
geometric property of some molecules and ions
enantiomer
thumb|(S)-(+)-lactic acid (left) and (R)-(–)-lactic acid (right) are non-superposable mirror images of each other.
VSEPR theory
theoretical model used in chemistry
racemate
mixture with equal amounts of left- and right-handed enantiomers of a chiral molecule
conformational isomerism
thumb|300px|Rotation about single bond of butane to interconvert one conformation to another. The gauche conformation on the right is a conformer, while the eclipsed conformation on the left is a transition state between conformers. Above: Newman projection; below: depiction of spatial orientation.
coordination number
number of atoms, molecules or ions bonded to in a molecule or crystal
protein primary structure
the full linear sequence of amino acids of a peptide or protein
dihedral angle
angle between two planes in space
protein secondary structure
general three-dimensional form of local segments of proteins
Fischer projection
projection formula in which vertically drawn bonds are considered to lie below the projection plane and horizontal bonds to lie above that plane
diatomic molecule
molecule composed of only two atoms of the same or different chemical elements
Haworth projection
projection formula in which the ring is drawn as if planar and the substituents points straight up or straight down perpendicular to the ring
optical rotation
rotation of the plane of linearly polarized light as it travels through a chiral material
diastereomers
{| align="right" class="wikitable" |- !colspan="2"|Diastereomers that are also epimers |- |bgcolor="#FFFFFF"| 150px |bgcolor="#FFFFFF"| 150px |- |bgcolor="#FFFFFF"| 166px |bgcolor="#FFFFFF"| 144px |- | D-threose | D-erythrose |}
epimer
In stereochemistry, an epimer is one of a pair of diastereomers. The two epimers have opposite configuration at only one stereogenic center out of at least two. All other stereogenic centers in the molecules are the same in each. Epimerization is the interconversion of one epimer to the other epimer.
steric effects
geometric aspects of ions and molecules affecting their shape and reactivity
mutarotation
In stereochemistry, mutarotation is the change in optical rotation of a chiral material in a solution due to a change in proportion of the two constituent anomers (i.e. the interconversion of their respective stereocenters) until equilibrium is reached. Cyclic sugars show mutarotation as α and β anomeric forms interconvert. The optical rotation of the solution depends on the optical rotation of each anomer and their ratio in the solution.
anomer
In carbohydrate chemistry, anomers () are specific types of stereoisomers found in sugars.
protein quaternary structure
number and arrangement of multiple folded protein subunits in a multi-subunit complex
Newman projection
projection formula representing the spatial arrangement of bonds on two adjacent atoms in a molecular entity
stereoisomerism
thumb|right|Two kinds of stereoisomers|200px
regioselectivity
In organic chemistry, regioselectivity is the preference of chemical bonding or breaking in one direction over all other possible directions. It can often apply to which of many possible positions a reagent will affect, such as which proton a strong base will abstract from an organic molecule, or where on a substituted benzene ring a further substituent will be added.
enantioselective synthesis
form of chemical synthesis
meso compound
an optically inactive isomer that has two or more stereocenters
stereocenter
upright=1.3|thumb|Two enantiomers of a generic [[amino acid at the stereocenter]]
Cahn–Ingold–Prelog priority rules
rules for ordering substituents when assigning descriptors to identify stereoisomers in organic chemistry nomeclature
stereoselectivity
In chemistry, stereoselectivity is the property of a chemical reaction in which a single reactant forms an unequal mixture of stereoisomers during a non-stereospecific creation of a new stereocenter or during a non-stereospecific transformation of a pre-existing one. The selectivity arises from differences in steric and electronic effects in the mechanistic pathways leading to the different products. Stereoselectivity can vary in degree but it can never be total since the activation energy difference between the two pathways is finite: both products are at least possible and merely differ in a
tacticity
thumb|right|A ball-and-stick model of syndiotactic polypropylene.
enantiomeric excess
difference between the abundance of enantiomers in a chiral substance
asymmetric carbon
carbon atom attached to four different atoms or groups
racemization
In chemistry, racemization is a conversion, by heat or by chemical reaction, of an optically active compound into a racemic (optically inactive) form. This creates a 1:1 molar ratio of enantiomers and is referred to as a racemic mixture (i.e. contain equal amount of (+) and (−) forms). Plus and minus forms are called dextrorotation and levorotation. The D and L enantiomers are present in equal quantities, the resulting sample is described as a racemic mixture or a racemate. Racemization can proceed through a number of different mechanisms, and it has particular significance in pharmacology in
stereospecificity
In chemistry, stereospecificity is the property of a reaction mechanism that leads to different stereoisomeric reaction products from different stereoisomeric reactants, or which operates on only one (or a subset) of the stereoisomers.
bent molecular geometry
molecular geometry
chirality
thumb|Two enantiomers of a generic amino acid that is chiral
molecular configuration
permanent geometry that results from the spatial arrangement of molecular bonds
specific rotation
optical property of chiral chemical compounds
Baldwin's rules
guidelines outlining the relative favorabilities of ring closure reactions in alicyclic compounds
Bredt's rule
Empirical observation that states that a double bond cannot be placed at the bridgehead of a bridged ring system
cyclohexane conformation
Structures of cyclohexane
chiral auxiliary
stereogenic group or unit that is temporarily incorporated into an organic compound in order to control the stereochemical outcome of the synthesis
E–Z notation
chemical nomenclature describing absolute stereochemistry of double bonds, generalizing cis–trans notation
Natta projection
stereochemical projection for an acyclic molecule (or portion of a molecule) where the main chain is represented by a zig-zag line in the plane and the substituents are shown above or below the plane
atropisomer
right|300px|thumb|Atropisomers of 6,6'-dinitro-2,2'-diphenic acid were first experimentally described case, by Christie and Kenner (1922).
Strain
chemistry
trigonal bipyramidal molecular geometry
Molecular geometry with 5 atoms bonded to a central atom and no lone pair.
prochirality
thumb|An sp2-hybridized carbon atom, with re and si faces
(±)-α-methoxy-α-trifluoromethylphenylacetic acid
group of stereoisomers
endo–exo isomerism
type of chemical isomerism
racemic acid
racemic mixture of tartaric acid
asymmetric induction
preferential formation of chemical reaction
homochirality
Homochirality is a uniformity of chirality, or handedness. Objects are chiral when they cannot be superposed on their mirror images. For example, the left and right hands of a human are approximately mirror images of each other but are not their own mirror images, so they are chiral. In chemistry, chirality is a geometric property of some compounds and ions. These compounds exist in two different chiral conformations, enantiomers, often described as the left-handed and right-handed isomers of a compound (denoted by L- (levorotatory to the left) and D- (dextrorotatory to the right), respectivel
staggered conformation
chemical conformation of an ethane-like moiety
absolute configuration
stereochemistry term
ligand cone angle
measure of the steric bulk of a ligand in a transition metal complex
gauche effect
atypical situation where groups separated by a torsion angle of approximately 60°, is more stable than 180°
Allylic strain
type of strain energy in organic chemistry
Eclipsed conformation