Structure via PubChem · Public domain (PubChem)
5-methylcytosine
Sign in to saveAlso known as 4-Amino-5-methyl-2-pyrimidinol, 4-amino-5-methyl-2(1H)-pyrimidinone, 6-amino-5-methyl-1H-pyrimidin-2-one, 6-azanyl-5-methyl-1H-pyrimidin-2-one, 5-mC
5-Methylcytosine (5mC, m5C) is a methylated form of the DNA base cytosine (C) that regulates gene transcription and takes several other biological roles. When cytosine is methylated, the DNA maintains the same sequence, but the expression of methylated genes can be altered (the study of this is part of the field of epigenetics). 5-Methylcytosine is incorporated in the nucleoside 5-methylcytidine.
Chemical data
- Formula
- C5H7N3O
- Molecular weight
- 125.13 g/mol
- IUPAC name
- 6-amino-5-methyl-1H-pyrimidin-2-one
- SMILES
- CC1=C(NC(=O)N=C1)N
- InChIKey
- LRSASMSXMSNRBT-UHFFFAOYSA-N
- XLogP
- -0.8
- Polar surface area
- 67.5 Ų
- H-bond donors
- 2
- H-bond acceptors
- 2
- Formal charge
- 0
via PubChem
Research
6,389 papers- 5-methylcytosine and its derivatives.Advances in clinical chemistry · 2014
- Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.Science (New York, N.Y.) · 2011
- 5-methylcytosine RNA methyltransferases and their potential roles in cancer.Journal of translational medicine · 2022
- RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark.RNA biology · 2021
- 5-Methylcytosine Analysis by RNA-BisSeq.Methods in molecular biology (Clifton, N.J.) · 2019
via PubMed
Wikidata facts
- Has part
- nitrogen
- Mass
- 125.059
Show 4 more facts
- chemical formula
- C₅H₇N₃O
- canonical SMILES
- CC1=C(NC(=O)N=C1)N
- found in taxon
- Caenorhabditis elegans
- Commons category
- 5-Methylcytosine
via Wikidata · CC0
~9 min read
Encyclopedic overview
10 sectionsContents
- Discovery
- ''In vivo''
- ''In vitro''
- Addition and regulation with DNMTs (Eukaryotes)
- Demethylation
- Role in humans
- In cancer
- As a biomarker of aging
- References
- Literature
5-Methylcytosine (5mC, m5C) is a methylated form of the DNA base cytosine (C) that regulates gene transcription and takes several other biological roles. When cytosine is methylated, the DNA maintains the same sequence, but the expression of methylated genes can be altered (the study of this is part of the field of epigenetics). 5-Methylcytosine is incorporated in the nucleoside 5-methylcytidine.
== Discovery == While trying to isolate the bacterial toxin responsible for tuberculosis, W.G. Ruppel isolated a novel nucleic acid named tuberculinic acid in 1898 from Tubercle bacillus. The nucleic acid was found to be unusual, in that it contained in addition to thymine, guanine and cytosine, a methylated nucleotide. In 1925, Johnson and Coghill successfully detected a minor amount of a methylated cytosine derivative as a product of hydrolysis of tuberculinic acid with sulfuric acid. This report was severely criticized because their identification was based solely on the optical properties of the crystalline picrate, and other scientists failed to reproduce the same result. But its existence was ultimately proven in 1948, when Hotchkiss separated the nucleic acids of DNA from calf thymus using paper chromatography, by which he detected a unique methylated cytosine, quite distinct from conventional cytosine and uracil. After seven decades, it turned out that it is also a common feature in different RNA molecules, although the precise role is uncertain.
Excerpted from Wikipedia’s “5-methylcytosine” article, available under the CC BY-SA 4.0 licence.