TIMD4
Sign in to saveAlso known as SMUCKLER, TIM4, T-cell immunoglobulin and mucin domain containing 4, T cell immunoglobulin and mucin domain containing 4
T-cell immunoglobulin and mucin domain containing 4 (TIMD-4) also known as T-cell membrane protein 4 (TIM-4) is a protein in humans that is encoded by the TIMD4 gene. TIM-4 genes are in mouse present on chromosome 11B1.1 and in humans on chromosome 5q33.2. TIM-4 contains IgV domain with integrin-binding site as well as a unique metal-ion-dependent ligand binding site for phosphatidylserine. TIM-4 also contains mucin domain with high levels of O-glycosylation. In comparison to other TIM proteins (such as TIM-1, TIM-2...) it does not contain a tyrosine-phosphorylation motif in its intracellular
In the Vinony graph
Within Vinony's link graph, TIMD4 is referenced by 5 other articles, and connects out to PubMed, human chromosome 5 and Ensembl genome database project.
It is catalogued under the topic Genes on human chromosome 5.
Its subject is documented across 6 Wikipedia language editions.
Gene data
TIMD4- Name
- T cell immunoglobulin and mucin domain containing 4
- Type
- protein-coding
- Position
- 156,918,639–156,963,230 (−)
- Aliases
- SMUCKLER, TIM4
- Ensembl
- ENSG00000145850
- RefSeq RNA
- NM_001146726.2, NM_138379.3, XM_011534694.3, XM_017010021.2, XM_054353790.1
- RefSeq protein
- NP_001140198.1, NP_612388.2, XP_011532996.1, XP_016865510.1, XP_054209765.1
Predicted to enable phosphatidylserine binding activity. Predicted to act upstream of or within apoptotic cell clearance. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Gene Ontology
Biological process
Molecular function
Cellular component
Pathways
via MyGene.info
Gene · Ensembl
T cell immunoglobulin and mucin domain containing 4
- Symbol
- TIMD4
- Biotype
- Protein coding
- Organism
- Homo sapiens
- Location
- 5:156,918,639-156,963,230
- Strand
- Reverse (−)
- Assembly
- GRCh38
via Ensembl · EMBL-EBI
Wikidata facts
- Instance of
- gene
Show 8 more facts
- HomoloGene ID
- 51381
- found in taxon
- Homo sapiens
- exact match
- identifiers.org/ncbigene/91937
- genomic end
- 156963226
- genomic start
- 156919292
- chromosome
- human chromosome 5
- cytogenetic location
- 5q33.3
- expressed in
- superficial temporal artery
Sources (3)
via Wikidata · CC0
~2 min read
Encyclopedic overview
3 sectionsContents
- TIM-4 expression and function
- Role in diseases and possible clinical use
- References
T-cell immunoglobulin and mucin domain containing 4 (TIMD-4) also known as T-cell membrane protein 4 (TIM-4) is a protein in humans that is encoded by the TIMD4 gene. TIM-4 genes are in mouse present on chromosome 11B1.1 and in humans on chromosome 5q33.2. TIM-4 contains IgV domain with integrin-binding site as well as a unique metal-ion-dependent ligand binding site for phosphatidylserine. TIM-4 also contains mucin domain with high levels of O-glycosylation. In comparison to other TIM proteins (such as TIM-1, TIM-2...) it does not contain a tyrosine-phosphorylation motif in its intracellular tail domain.
== TIM-4 expression and function == Unlike other TIMs that are mainly expressed on T cells TIM-4 is expressed on APCs such as dendritic cells or macrophages. TIM-4 serves as a ligand for TIM-1 but also as a receptor for phosphatidylserine. Its phosphatidylserine binding however does not mediate signalling instead it works more as a tethering receptor. Its phosphatidylserine binding properties also play an important role in removal of apoptotic cells. Moreover recognition of phosphatidylserine also helps to control adaptive immune system by clearing phosphatidylserine expressing apoptotic T cells. That leads to the regulation of antigen specific memory T cells. TIM-4 is also able to inhibit naive T cells by non-TIM-1 receptor binding but once T cells are active TIM-4 works as positive regulator helping to maintain their activity. TIM-4 expression on macrophages plays an important role in their homeostatic maintenance.
Excerpted from Wikipedia’s “TIMD4” article, available under the CC BY-SA 4.0 licence.