HNRNPK
Sign in to saveAlso known as CSBP, HNRPK, TUNP, AUKS, heterogeneous nuclear ribonucleoprotein K
Heterogeneous nuclear ribonucleoprotein K (also protein K) is a protein that in humans is encoded by the HNRNPK gene. It is found in the cell nucleus that binds to pre-messenger RNA (mRNA) as a component of heterogeneous ribonucleoprotein particles. The simian homolog is known as protein H16. Both proteins bind to single-stranded DNA as well as to RNA and can stimulate the activity of RNA polymerase II, the protein responsible for most gene transcription. The relative affinities of the proteins for DNA and RNA vary with solution conditions and are inversely correlated, so that conditions promo
Gene data
HNRNPK- Name
- heterogeneous nuclear ribonucleoprotein K
- Type
- protein-coding
- Position
- 83,966,674–83,981,586 (−)
- Aliases
- AUKS, CSBP, HNRPK, TUNP
- Ensembl
- ENSG00000165119
- RefSeq RNA
- NM_001318186.2, NM_001318187.2, NM_001318188.2, NM_002140.5, NM_031262.4
- RefSeq protein
- NP_001305115.1, NP_001305116.1, NP_001305117.1, NP_002131.2, NP_112552.1
This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene is located in the nucleoplasm and has three repeats of KH domains that binds to RNAs. It is distinct among other hnRNP proteins in its binding preference; it binds tenaciously to poly(C). This protein is also thought to have a role during cell cycle progession. Several alternatively spliced transcript variants have been described for this gene, however, not all of them are fully characterized. [provided by RefSeq, Jul 2008].
Gene Ontology
Biological process
Molecular function
Pathways
via MyGene.info
Gene · Ensembl
heterogeneous nuclear ribonucleoprotein K
- Symbol
- HNRNPK
- Biotype
- Protein coding
- Organism
- Homo sapiens
- Location
- 9:83,966,674-83,981,586
- Strand
- Reverse (−)
- Assembly
- GRCh38
via Ensembl · EMBL-EBI
Wikidata facts
- Instance of
- gene
- Image
- Protein HNRPK PDB 1j5k.png
Show 7 more facts
- HomoloGene ID
- 81909
- found in taxon
- Homo sapiens
- exact match
- identifiers.org/ncbigene/3190
- genomic end
- 83980616
- genomic start
- 86582998
- chromosome
- human chromosome 9
- cytogenetic location
- 9q21.32
Sources (6)
via Wikidata · CC0
~4 min read
Encyclopedic overview
9 sectionsContents
- Function
- Clinical significance
- Okamoto syndrome
- Blood cancers
- Interactions
- Human proteins containing a KH domain
- References
- Further reading
- External links
Heterogeneous nuclear ribonucleoprotein K (also protein K) is a protein that in humans is encoded by the HNRNPK gene. It is found in the cell nucleus that binds to pre-messenger RNA (mRNA) as a component of heterogeneous ribonucleoprotein particles. The simian homolog is known as protein H16. Both proteins bind to single-stranded DNA as well as to RNA and can stimulate the activity of RNA polymerase II, the protein responsible for most gene transcription. The relative affinities of the proteins for DNA and RNA vary with solution conditions and are inversely correlated, so that conditions promoting strong DNA binding result in weak RNA binding.
RNA binding protein domains in other proteins that are similar to the RNA binding domain of protein K are called K-homology or KH domains.
Excerpted from Wikipedia’s “HNRNPK” article, available under the CC BY-SA 4.0 licence.