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Also known as PDB
international open access database of protein and nucleic acid structures
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RCSB PDB: PDB History
The PDB was established in 1971 at Brookhaven National Laboratory under the leadership of Walter Hamilton and originally contained 7 structures.
rcsb.org →October 2011 Molecule of the Month features historic structures that set the foundation for the PDB archive. In 2003, the Worldwide Protein Data Bank (wwPDB ) was formed to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community. It consists of organizations that act as deposition, data processing and distribution centers for PDB data. CARB/NIST left RCSB PDB in 2005 (see Emeritus RCSB PDB Leadership ). In 2021, RCSB PDB and the wwPDB celebrated the 50th Anniversary of the PDB with symposia, materials, and more. Nobel Prize in Chemistry: to David Baker for computational protein design and to Demis Hassabis and John M. Jumper for protein structure prediction Nobel Prize in Chemistry Carolyn Bertozzi, Morten Meldal, K. Barry Sharpless for the development of click chemistry and bioorthogonal chemistry Nobel Prize in Chemistry: Emmanuelle Charpentier and Jennifer A. Doudna for the development of a method for genome editing Nobel Prize awarded to Frances H. Arnold for the Directed Evolution of Enzymes Nobel Prize in Chemistry: Robert J. Lefkowitz and Brian K. Kobilka for studies of G-protein-coupled receptors Nobel Prize in Chemistry: Venkatraman Ramakrishnan, Thomas A. Steitz and Ada E. Yonath for studies of the structure and function of the ribosome Nobel Prize in Chemistry Roger D. Kornberg for his studies of the molecular basis of eukaryotic transcription Carter, A.P., Clemons, W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T. and Ramakrishnan, V. (2000) Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature , 407, 340-348. Nobel Prize in Chemistry: Paul D. Boyer and John E. Walker for their elucidation of the enzymatic mechanism underlying the synthesis of adenosine
蛋白質資料庫(Protein Data Bank,简称PDB)是一個專門收錄蛋白質及核酸的三維結構資料的数据庫。由Worldwide Protein Data Bank监管。PDB可以经由网络免费访问,是结构生物学研究中的重要资源。为了确保PDB资料的完备与权威,各个主要的科学杂志、基金组织会要求科学家将自己的研究成果提交给PDB。在PDB的基础上,还发展出来若干依据不同原则对PDB结构数据进行分类的数据库,例如GO将PDB中的数据按基因进行了分类。這些資料和數據一般是世界各地的结构生物学家經由X射線晶體學或NMR光譜學實驗所得,並釋放到公有領域供公众免費使用。
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Discovered by embedding cosine similarity (sentence-transformers MiniLM, 384-dim).
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